Detailed information of SNP:
|
SNP ID:
sf0624654963(Gbrowse)
Chromosome: chr06 Position: 24654963 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1271 | 54.29% | 45.71% |
| All Indica | 659 | 16.24% | 83.76% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 300 | 13.67% | 86.33% |
| Indica II | 182 | 20.33% | 79.67% |
| Indica Intermediate | 177 | 16.38% | 83.62% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624654963 | C->A | LOC_Os06g41200(LOC_Os06g41200.1) | INTRON |