Detailed information of SNP:
|
SNP ID:
sf0624680289(Gbrowse)
Chromosome: chr06 Position: 24680289 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 65.02% | 34.98% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 480 | 20.83% | 79.17% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 321 | 25.86% | 74.14% |
| Tropical Japonica | 92 | 6.52% | 93.48% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624680289 | C->G | INTERGENIC | None |