Detailed information of SNP:
|
SNP ID:
sf0624686217(Gbrowse)
Chromosome: chr06 Position: 24686217 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 89.56% | 10.44% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 496 | 71.57% | 28.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 75.45% | 24.55% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624686217 | G->A | LOC_Os06g41250(LOC_Os06g41250.1) | INTRON |