Detailed information of SNP:
|
SNP ID:
sf0624686320(Gbrowse)
Chromosome: chr06 Position: 24686320 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 50.28% | 49.72% |
| All Indica | 794 | 84.63% | 15.37% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 371 | 87.60% | 12.40% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 210 | 81.90% | 18.10% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624686320 | C->T | LOC_Os06g41250(LOC_Os06g41250.1) | INTRON |