Detailed information of SNP:
|
SNP ID:
sf0624861162(Gbrowse)
Chromosome: chr06 Position: 24861162 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 84.20% | 15.80% |
| All Indica | 788 | 91.50% | 8.50% |
| All Japonica | 494 | 72.06% | 27.94% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 91.67% | 8.33% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 334 | 67.37% | 32.63% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624861162 | A->G | INTERGENIC | None |