Detailed information of SNP:
|
SNP ID:
sf0624879133(Gbrowse)
Chromosome: chr06 Position: 24879133 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 69.99% | 30.01% |
| All Indica | 796 | 50.25% | 49.75% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 374 | 68.98% | 31.02% |
| Indica II | 212 | 33.02% | 66.98% |
| Indica Intermediate | 210 | 34.29% | 65.71% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624879133 | T->G | INTERGENIC | None |