Detailed information of SNP:



SNP ID: sf0624879133(Gbrowse)

Chromosome: chr06

Position: 24879133
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1413 69.99% 30.01%
All Indica796 50.25% 49.75%
All Japonica495 99.19% 0.81%
Aus66 81.82% 18.18%
Indica I374 68.98% 31.02%
Indica II212 33.02% 66.98%
Indica Intermediate210 34.29% 65.71%
Temperate Japonica333 99.10% 0.90%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0624879133 T->G INTERGENIC None