Detailed information of SNP:
|
SNP ID:
sf0624892520(Gbrowse)
Chromosome: chr06 Position: 24892520 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.39% | 44.61% |
| All Indica | 799 | 37.92% | 62.08% |
| All Japonica | 497 | 77.87% | 22.13% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 61.60% | 38.40% |
| Indica II | 213 | 11.27% | 88.73% |
| Indica Intermediate | 211 | 22.75% | 77.25% |
| Temperate Japonica | 335 | 73.13% | 26.87% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624892520 | G->A | INTERGENIC | None |