Detailed information of SNP:
|
SNP ID:
sf0624912217(Gbrowse)
Chromosome: chr06 Position: 24912217 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 58.73% | 41.27% |
| All Indica | 780 | 35.26% | 64.74% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 371 | 20.49% | 79.51% |
| Indica II | 204 | 50.98% | 49.02% |
| Indica Intermediate | 205 | 46.34% | 53.66% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624912217 | G->C | LOC_Os06g41570(LOC_Os06g41570.1) | Synonymous |