Detailed information of SNP:
|
SNP ID:
sf0624940332(Gbrowse)
Chromosome: chr06 Position: 24940332 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 80.73% | 19.27% |
| All Indica | 772 | 66.45% | 33.55% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 75.76% | 24.24% |
| Indica II | 209 | 57.89% | 42.11% |
| Indica Intermediate | 200 | 58.50% | 41.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624940332 | T->C | LOC_Os06g41660(LOC_Os06g41660.1) | Non-Synonymous SNP |