Detailed information of SNP:
|
SNP ID:
sf0624955405(Gbrowse)
Chromosome: chr06 Position: 24955405 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 51.35% | 48.65% |
| All Indica | 785 | 86.62% | 13.38% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 361 | 80.89% | 19.11% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0624955405 | T->C | LOC_Os06g41670(LOC_Os06g41670.1) | UTR_3_PRIME |