Detailed information of SNP:
|
SNP ID:
sf0625067803(Gbrowse)
Chromosome: chr06 Position: 25067803 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 69.55% | 30.45% |
| All Indica | 781 | 95.90% | 4.10% |
| All Japonica | 496 | 27.62% | 72.38% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 367 | 99.18% | 0.82% |
| Indica II | 205 | 92.68% | 7.32% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 334 | 35.03% | 64.97% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625067803 | A->G | LOC_Os06g41800(LOC_Os06g41800.1) | INTRON |