Detailed information of SNP:
|
SNP ID:
sf0625067805(Gbrowse)
Chromosome: chr06 Position: 25067805 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1209 | 84.04% | 15.96% |
| All Indica | 601 | 89.68% | 10.32% |
| All Japonica | 494 | 75.30% | 24.70% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 209 | 85.65% | 14.35% |
| Indica II | 205 | 94.15% | 5.85% |
| Indica Intermediate | 187 | 89.30% | 10.70% |
| Temperate Japonica | 332 | 66.87% | 33.13% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625067805 | C->T | LOC_Os06g41800(LOC_Os06g41800.1) | INTRON |