Detailed information of SNP:
|
SNP ID:
sf0625072433(Gbrowse)
Chromosome: chr06 Position: 25072433 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 59.55% | 40.45% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625072433 | A->G | INTERGENIC | None |