Detailed information of SNP:
|
SNP ID:
sf0625092790(Gbrowse)
Chromosome: chr06 Position: 25092790 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.92% | 44.08% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625092790 | C->T | LOC_Os06g41850(LOC_Os06g41850.1) | Synonymous |