Detailed information of SNP:
|
SNP ID:
sf0625162809(Gbrowse)
Chromosome: chr06 Position: 25162809 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 59.24% | 40.76% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625162809 | C->T | LOC_Os06g41930(LOC_Os06g41930.3) | UTR_3_PRIME |
| sf0625162809 | C->T | LOC_Os06g41930(LOC_Os06g41930.2) | UTR_3_PRIME |
| sf0625162809 | C->T | LOC_Os06g41930(LOC_Os06g41930.5) | UTR_3_PRIME |
| sf0625162809 | C->T | LOC_Os06g41930(LOC_Os06g41930.4) | UTR_3_PRIME |
| sf0625162809 | C->T | LOC_Os06g41930(LOC_Os06g41930.1) | UTR_3_PRIME |