Detailed information of SNP:
|
SNP ID:
sf0625173843(Gbrowse)
Chromosome: chr06 Position: 25173843 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.27% | 39.73% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625173843 | T->G | LOC_Os06g41950(LOC_Os06g41950.1) | INTRON |