Detailed information of SNP:
|
SNP ID:
sf0625174153(Gbrowse)
Chromosome: chr06 Position: 25174153 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 89.46% | 10.54% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 491 | 73.32% | 26.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 89 | 59.55% | 40.45% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625174153 | C->A | LOC_Os06g41950(LOC_Os06g41950.1) | INTRON |