Detailed information of SNP:
|
SNP ID:
sf0625174768(Gbrowse)
Chromosome: chr06 Position: 25174768 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 89.18% | 10.82% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 492 | 72.76% | 27.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 82.39% | 17.61% |
| Tropical Japonica | 91 | 59.34% | 40.66% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625174768 | T->A | LOC_Os06g41950(LOC_Os06g41950.1) | INTRON |