Detailed information of SNP:
|
SNP ID:
sf0625218862(Gbrowse)
Chromosome: chr06 Position: 25218862 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.14% | 34.86% |
| All Indica | 797 | 47.43% | 52.57% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 29.14% | 70.86% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625218862 | G->A | INTERGENIC | None |