Detailed information of SNP:
|
SNP ID:
sf0625254457(Gbrowse)
Chromosome: chr06 Position: 25254457 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 96.48% | 3.52% |
| All Indica | 788 | 97.46% | 2.54% |
| All Japonica | 484 | 94.42% | 5.58% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 369 | 97.56% | 2.44% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 332 | 97.59% | 2.41% |
| Tropical Japonica | 90 | 83.33% | 16.67% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625254457 | T->C | INTERGENIC | None |