Detailed information of SNP:
|
SNP ID:
sf0625305079(Gbrowse)
Chromosome: chr06 Position: 25305079 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1227 | 57.78% | 42.22% |
| All Indica | 698 | 78.22% | 21.78% |
| All Japonica | 421 | 21.62% | 78.38% |
| Aus | 61 | 60.66% | 39.34% |
| Indica I | 327 | 90.83% | 9.17% |
| Indica II | 181 | 68.51% | 31.49% |
| Indica Intermediate | 190 | 65.79% | 34.21% |
| Temperate Japonica | 294 | 12.93% | 87.07% |
| Tropical Japonica | 71 | 50.70% | 49.30% |
| Japonica Intermediate | 56 | 30.36% | 69.64% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625305079 | G->A | INTERGENIC | None |