Detailed information of SNP:
|
SNP ID:
sf0625358038(Gbrowse)
Chromosome: chr06 Position: 25358038 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 93.86% | 6.14% |
| All Indica | 780 | 89.23% | 10.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 94.89% | 5.11% |
| Indica II | 209 | 85.65% | 14.35% |
| Indica Intermediate | 199 | 82.41% | 17.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625358038 | T->C | LOC_Os06g42230(LOC_Os06g42230.1) | INTRON |
| sf0625358038 | T->C | LOC_Os06g42230(LOC_Os06g42230.1) | SNPs that disrupt splice sites |