Detailed information of SNP:
|
SNP ID:
sf0625533716(Gbrowse)
Chromosome: chr06 Position: 25533716 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 90.56% | 9.44% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625533716 | T->C | INTERGENIC | None |