Detailed information of SNP:
|
SNP ID:
sf0625653855(Gbrowse)
Chromosome: chr06 Position: 25653855 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 97.28% | 2.72% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 478 | 92.89% | 7.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 99.09% | 0.91% |
| Tropical Japonica | 80 | 66.25% | 33.75% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625653855 | A->G | INTERGENIC | None |