Detailed information of SNP:
|
SNP ID:
sf0625655835(Gbrowse)
Chromosome: chr06 Position: 25655835 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 71.57% | 28.43% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 481 | 29.31% | 70.69% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 324 | 42.59% | 57.41% |
| Tropical Japonica | 91 | 1.10% | 98.90% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625655835 | T->A | INTERGENIC | None |