Detailed information of SNP:
|
SNP ID:
sf0625664255(Gbrowse)
Chromosome: chr06 Position: 25664255 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 60.65% | 39.35% |
| All Indica | 774 | 95.61% | 4.39% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 64 | 76.56% | 23.44% |
| Indica I | 363 | 96.42% | 3.58% |
| Indica II | 207 | 91.79% | 8.21% |
| Indica Intermediate | 204 | 98.04% | 1.96% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625664255 | T->C | LOC_Os06g42670(LOC_Os06g42670.1) | INTRON |