Detailed information of SNP:
|
SNP ID:
sf0625670191(Gbrowse)
Chromosome: chr06 Position: 25670191 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 95.77% | 4.23% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 87.90% | 12.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 82.34% | 17.66% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625670191 | A->G | LOC_Os06g42680(LOC_Os06g42680.1) | INTRON |
| sf0625670191 | A->G | LOC_Os06g42680(LOC_Os06g42680.2) | INTRON |