Detailed information of SNP:
|
SNP ID:
sf0625835725(Gbrowse)
Chromosome: chr06 Position: 25835725 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 89.50% | 10.50% |
| All Indica | 790 | 82.03% | 17.97% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 83.70% | 16.30% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625835725 | C->T | LOC_Os06g43000(LOC_Os06g43000.1) | UTR_3_PRIME |