Detailed information of SNP:
|
SNP ID:
sf0625838944(Gbrowse)
Chromosome: chr06 Position: 25838944 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 92.84% | 7.16% |
| All Indica | 792 | 88.01% | 11.99% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 370 | 88.38% | 11.62% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0625838944 | G->T | INTERGENIC | None |