Detailed information of SNP:
|
SNP ID:
sf0626046471(Gbrowse)
Chromosome: chr06 Position: 26046471 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 55.07% | 44.93% |
| All Indica | 783 | 91.57% | 8.43% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 65 | 32.31% | 67.69% |
| Indica I | 368 | 94.02% | 5.98% |
| Indica II | 207 | 85.99% | 14.01% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626046471 | A->C | INTERGENIC | None |