Detailed information of SNP:
|
SNP ID:
sf0626052137(Gbrowse)
Chromosome: chr06 Position: 26052137 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 55.53% | 44.47% |
| All Indica | 790 | 92.41% | 7.59% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 369 | 92.41% | 7.59% |
| Indica II | 211 | 89.57% | 10.43% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626052137 | G->C | LOC_Os06g43340(LOC_Os06g43340.1) | Non-Synonymous SNP |