Detailed information of SNP:
|
SNP ID:
sf0626057263(Gbrowse)
Chromosome: chr06 Position: 26057263 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 54.58% | 45.42% |
| All Indica | 788 | 85.66% | 14.34% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 370 | 85.68% | 14.32% |
| Indica II | 212 | 82.08% | 17.92% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626057263 | A->G | INTERGENIC | None |