Detailed information of SNP:
|
SNP ID:
sf0626068360(Gbrowse)
Chromosome: chr06 Position: 26068360 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 65.37% | 34.63% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 496 | 7.46% | 92.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 3.89% | 96.11% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626068360 | A->G | LOC_Os06g43360(LOC_Os06g43360.1) | Synonymous |