Detailed information of SNP:
|
SNP ID:
sf0626090814(Gbrowse)
Chromosome: chr06 Position: 26090814 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 54.94% | 45.06% |
| All Indica | 777 | 30.12% | 69.88% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 361 | 33.24% | 66.76% |
| Indica II | 210 | 34.76% | 65.24% |
| Indica Intermediate | 206 | 19.90% | 80.10% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626090814 | G->A | INTERGENIC | None |