Detailed information of SNP:
|
SNP ID:
sf0626091377(Gbrowse)
Chromosome: chr06 Position: 26091377 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 66.12% | 33.88% |
| All Indica | 789 | 44.36% | 55.64% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 369 | 36.04% | 63.96% |
| Indica II | 211 | 41.23% | 58.77% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626091377 | A->C | INTERGENIC | None |