Detailed information of SNP:
|
SNP ID:
sf0626131401(Gbrowse)
Chromosome: chr06 Position: 26131401 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1279 | 58.09% | 41.91% |
| All Indica | 699 | 97.28% | 2.72% |
| All Japonica | 492 | 0.61% | 99.39% |
| Aus | 37 | 97.30% | 2.70% |
| Indica I | 312 | 99.36% | 0.64% |
| Indica II | 195 | 91.79% | 8.21% |
| Indica Intermediate | 192 | 99.48% | 0.52% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 90 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626131401 | T->C | INTERGENIC | None |