Detailed information of SNP:
|
SNP ID:
sf0626133564(Gbrowse)
Chromosome: chr06 Position: 26133564 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 85.45% | 14.55% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 474 | 60.97% | 39.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 71.61% | 28.39% |
| Tropical Japonica | 90 | 27.78% | 72.22% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626133564 | G->A | INTERGENIC | None |