Detailed information of SNP:
|
SNP ID:
sf0626187535(Gbrowse)
Chromosome: chr06 Position: 26187535 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 60.25% | 39.75% |
| All Indica | 799 | 35.79% | 64.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 29.87% | 70.13% |
| Indica II | 213 | 22.54% | 77.46% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626187535 | C->T | INTERGENIC | None |