Detailed information of SNP:
|
SNP ID:
sf0626211885(Gbrowse)
Chromosome: chr06 Position: 26211885 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.79% | 42.21% |
| All Indica | 799 | 31.04% | 68.96% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 24.80% | 75.20% |
| Indica II | 213 | 22.54% | 77.46% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626211885 | T->C | INTERGENIC | None |