Detailed information of SNP:
|
SNP ID:
sf0626308170(Gbrowse)
Chromosome: chr06 Position: 26308170 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 69.61% | 30.39% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 481 | 17.26% | 82.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 12.54% | 87.46% |
| Tropical Japonica | 89 | 11.24% | 88.76% |
| Japonica Intermediate | 65 | 49.23% | 50.77% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626308170 | T->G | LOC_Os06g43690(LOC_Os06g43690.1) | INTRON |