Detailed information of SNP:



SNP ID: sf0626320319(Gbrowse)

Chromosome: chr06

Position: 26320319
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1313 87.97% 12.03%
All Indica794 99.75% 0.25%
All Japonica396 62.88% 37.12%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II208 99.04% 0.96%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica268 50.37% 49.63%
Tropical Japonica72 91.67% 8.33%
Japonica Intermediate56 85.71% 14.29%
Group VI/Aromatic14 50.00% 50.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0626320319 A->G LOC_Os06g43730(LOC_Os06g43730.1) Synonymous