Detailed information of SNP:
|
SNP ID:
sf0626320319(Gbrowse)
Chromosome: chr06 Position: 26320319 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1313 | 87.97% | 12.03% |
| All Indica | 794 | 99.75% | 0.25% |
| All Japonica | 396 | 62.88% | 37.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 99.04% | 0.96% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 268 | 50.37% | 49.63% |
| Tropical Japonica | 72 | 91.67% | 8.33% |
| Japonica Intermediate | 56 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626320319 | A->G | LOC_Os06g43730(LOC_Os06g43730.1) | Synonymous |