Detailed information of SNP:
|
SNP ID:
sf0626321634(Gbrowse)
Chromosome: chr06 Position: 26321634 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 51.31% | 48.69% |
| All Indica | 799 | 25.91% | 74.09% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 10.40% | 89.60% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 18.96% | 81.04% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626321634 | C->T | INTERGENIC | None |