Detailed information of SNP:
|
SNP ID:
sf0626323307(Gbrowse)
Chromosome: chr06 Position: 26323307 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 82.77% | 17.23% |
| All Indica | 797 | 76.41% | 23.59% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626323307 | G->A | INTERGENIC | None |