Detailed information of SNP:
|
SNP ID:
sf0626386320(Gbrowse)
Chromosome: chr06 Position: 26386320 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 55.48% | 44.52% |
| All Indica | 796 | 26.13% | 73.87% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 10.43% | 89.57% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 209 | 17.70% | 82.30% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626386320 | T->A | INTERGENIC | None |