Detailed information of SNP:
|
SNP ID:
sf0626416088(Gbrowse)
Chromosome: chr06 Position: 26416088 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.26% | 44.74% |
| All Indica | 798 | 26.19% | 73.81% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 374 | 11.23% | 88.77% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626416088 | C->T | INTERGENIC | None |