Detailed information of SNP:
|
SNP ID:
sf0626493214(Gbrowse)
Chromosome: chr06 Position: 26493214 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 69.46% | 30.54% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 474 | 17.51% | 82.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 321 | 15.26% | 84.74% |
| Tropical Japonica | 91 | 9.89% | 90.11% |
| Japonica Intermediate | 62 | 40.32% | 59.68% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626493214 | T->C | INTERGENIC | None |