Detailed information of SNP:
|
SNP ID:
sf0626584098(Gbrowse)
Chromosome: chr06 Position: 26584098 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.07% | 40.93% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626584098 | T->C | INTERGENIC | None |