Detailed information of SNP:
|
SNP ID:
sf0626615284(Gbrowse)
Chromosome: chr06 Position: 26615284 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 94.70% | 5.30% |
| All Indica | 759 | 90.38% | 9.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 356 | 96.07% | 3.93% |
| Indica II | 203 | 77.83% | 22.17% |
| Indica Intermediate | 200 | 93.00% | 7.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626615284 | A->T | INTERGENIC | None |