Detailed information of SNP:
|
SNP ID:
sf0626630485(Gbrowse)
Chromosome: chr06 Position: 26630485 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 64.85% | 35.15% |
| All Indica | 793 | 40.48% | 59.52% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 373 | 42.36% | 57.64% |
| Indica II | 209 | 13.88% | 86.12% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626630485 | G->A | INTERGENIC | None |