Detailed information of SNP:
|
SNP ID:
sf0626643877(Gbrowse)
Chromosome: chr06 Position: 26643877 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.81% | 46.19% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626643877 | G->A | INTERGENIC | None |